Inhalt |
---|
HLRN NHR provides tailored WORK filesystem file systems for improved IO throughput for of IO intense job workloads.
Filesystem Types
Default Lustre (WORK)
This WORK is the default shared Filesystem file system for all jobs and can be accessed using the $WORK
variable. WORK consists WORK is accessible for all users and consists of 8 Metadata Targets (MDT's) with NVMe SSDs and 28 Object Storage Targets (OST's) on Lise and 96 OST's on Emmy. Both using rotational using classical hard drives.
Access: $WORK
Size: 8 PiB quoted
Special File System Types
Lustre with striping (WORK)
Some workloads will benefit of striping. Files will be split transparently between a number of 2 up to 28 OSTs on Lise and up to 96 OST's on Emmy.
Especially large shared file IO patterns will perform good using stripingbenefit from striping. Up to 28 OSTs on Lise can be used, recommended are up to 8 OSTs for Lise. We have preconfigured a progressive file layout (PFL), which sets an automatic striping based on the file size.
Access: create a directory with striping using "new directory in $WORK
and set lfs setstripe -c <stripsize> <dir>
"
Size: 8 PiB like $WORKWORK
Local SSDs
Some Compute Nodes have are installed with local SSD storage. Files on local SSDs . These node share the following properties.
- 2 TB SSD locally attached to the node
- Data on SSD will be deleted after the job is finished.
- Data on SSD can not be shared across nodes
...
- .
For single node unshared local IO this is the best performing filesystem file system to use.
Lise: SSD | Lise: CAS |
---|
slurm partition |
using |
cpu-clx:large and using |
via queue medium96
using $LOCAL_TMPDIR
Type and size | 2 TB Intel NVMe SSD DC P4511 |
Intel NVMe SSD DC P4511 (2 TB) using Intel Optane SSD DC P4801X (200 GB) as |
write-trough cache |
FastIO
...
WORK is extended with 4 additional OST's using NVMe SSDs integrated into WORK.
Access: ask support@hlrn.de for access
Size: to accelerate heavy (random) IO-demands. To accelerate specific IO-demands further striping for up to these 4 OSTs is available.
Access:
create a new directory in $WORK
and set lfs setstripe -p flash <dir>
Size:
55 TiB - quoted
IME - Emmy only
---
Access: IME Burst Buffer, File System Cache
Size:
Finding the right
...
File System
If your jobs have a significant IO part we recommend asking your consultant via support@hlrnsupport@nhr.zib.de to recommend the right filesystem file system for you.
Local IO
If you have a significant amount of node-local IO which is not needed to be accessed after job end and will be smaller than 2 TB on Lise and 400 GB on Emmy we recommend using $LOCAL_TMPDIR. Depending on your IO pattern this may accelerate IO to up to 100%.
...
Global IO is defined as shared IO which will be able to be accessed from multiple nodes at the same time and will be persistent after job end.
Especially random IO on small files will be accelerated up to 200% using FastIO on Lise or IME on Emmy
INTERNAL
Recommendation Matrix:
The maximum performance gain on IO versus $WORK is mentioned in brackets.
...
FastIO stripe=4 (+200%) or
$WORK stripe=4-8 (+200%)
...
FastIO stripe=4 (+80%)
$WORK stripe=4-8 (+70%)
...
FastIO stripe=4 (+120%)
$WORK stripe=MAX (+90%)
...
FastIO stripe=4 (+200%) or
$WORK stripe=MAX (+150%)
...
FastIO stripe=4 (+100%)
FastIO (+50%)
Vorschlag Ankündigung
...
.
...