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- Produce a module file. It should be sufficient, to copy that of the previous version and to change the version number in the file.
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Single R-package installation
Before a package is installed, the correct compiler module must be loaded. Otherwise the system compiler is used. Since c++ is used a lot, this may result in an inconsistent package library. It is not needed, to load a R-module file, when the scripts described below are used.
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Automatic removal from the list of default packages is not implemented yet.
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Default R-packages
To install the bundle of predefined R-packages, use the script install_packages. It
- loads the appropriate compiler module
- employs install_cran, install_github and install_bioc to install the packages
- sets the correct permissions for the installed files and libraries
- documents success or failure of the installation
| Codeblock |
|---|
$ ./install _packages |
The lists are located in /sw/viz/R/package_list. They can be maintained with any editor. They are the result of user requests in the past. They are over-complete, since many packages are installed in any case as prerequisite for other packages. Success or failure are reported in packages_success.log and packages_failed.log.
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